研究动态
Articles below are published ahead of final publication in an issue. Please cite articles in the following format: authors, (year), title, journal, DOI.

间接通过仅肿瘤基因组分析检测到的胚系变异在患有间皮瘤的患者中被意外发现。

Germline Variants Incidentally Detected via Tumor-Only Genomic Profiling of Patients With Mesothelioma.

发表日期:2023 Aug 01
作者: Owen D Mitchell, Katie Gilliam, Daniela Del Gaudio, Kelsey E McNeely, Shaili Smith, Maria Acevedo, Meghana Gaduraju, Rachel Hodge, Aubrianna S S Ramsland, Jeremy Segal, Soma Das, Feighanne Hathaway, Darren S Bryan, Sanjukta Tawde, Shelly Galasinski, Peng Wang, Melissa Y Tjota, Aliya N Husain, Samuel G Armato, Jessica Donington, Mark K Ferguson, Kiran Turaga, Jane E Churpek, Hedy L Kindler, Michael W Drazer
来源: JAMA Network Open

摘要:

患有间皮瘤的患者通常会对其肿瘤进行下一代测序(NGS);然而,就算该测序并非为检测该类变异而设计,它也可能意外地识别到有致病变异或有高度可能致病的(P/LP)常见变异。目前尚不清楚患有间皮瘤患者中存在多少通过肿瘤-only NGS 无意间地检测出的有效致病或可能致病变异的情况。 为了确定通过间皮瘤的肿瘤-only NGS 检测到的有效致病或可能致病变异的患病率,我们从一家高产量的间皮瘤项目中选取了2016年4月至2021年10月期间的161位无关联的间皮瘤患者进行了肿瘤-only NGS 和正常生殖线NGS 检测。随访时间跨度为18个月至7年。在2023年1月至3月期间,我们对肿瘤和正常生殖线试验进行了比较,以确定通过肿瘤-only NGS 检测到的P/LP变异是否为正常生殖线起源。 有关通过肿瘤-only NGS 检测到的P/LP 生殖线变异的患者人数在所有间皮瘤患者中所占的比例。 在161位间皮瘤患者中,男性占105人(65%),平均(标准差)年龄为64.7(11.2)岁,有156位患者(97%)自认为非西班牙裔白人。大多数(126位患者[78%])至少有一种潜在的意外P/LP 生殖线变异。通过肿瘤-only NGS 检测的潜在意外生殖线 P/LP变异的阳性预测值为20%。总体而言,有26位患者(16%)携带了P/LP 生殖线变异。在ATM、ATR、BAP1、CHEK2、DDX41、FANCM、HAX1、MRE11A、MSH6、MUTYH、NF1、SAMD9L和TMEM127中发现了生殖线 P/LP 变异。 在这161例患有间皮瘤的病例中,16%的病人患有确诊的生殖线 P/LP 变异。鉴于遗传性癌症综合症诊断对预防护理和家庭咨询的影响,有必要进行临床探讨来解决肿瘤-only NGS 中意外 P/LP 生殖线变异的问题。肿瘤-only 测序不能替代专用的生殖线检测。对于患有间皮瘤的患者,可能需要进行全面的生殖线检测。
Patients with mesothelioma often have next-generation sequencing (NGS) of their tumor performed; tumor-only NGS may incidentally identify germline pathogenic or likely pathogenic (P/LP) variants despite not being designed for this purpose. It is unknown how frequently patients with mesothelioma have germline P/LP variants incidentally detected via tumor-only NGS.To determine the prevalence of incidental germline P/LP variants detected via tumor-only NGS of mesothelioma.A series of 161 unrelated patients with mesothelioma from a high-volume mesothelioma program had tumor-only and germline NGS performed during April 2016 to October 2021. Follow-up ranged from 18 months to 7 years. Tumor and germline assays were compared to determine which P/LP variants identified via tumor-only NGS were of germline origin. Data were analyzed from January to March 2023.The proportion of patients with mesothelioma who had P/LP germline variants incidentally detected via tumor-only NGS.Of 161 patients with mesothelioma, 105 were male (65%), the mean (SD) age was 64.7 (11.2) years, and 156 patients (97%) self-identified as non-Hispanic White. Most (126 patients [78%]) had at least 1 potentially incidental P/LP germline variant. The positive predictive value of a potentially incidental germline P/LP variant on tumor-only NGS was 20%. Overall, 26 patients (16%) carried a P/LP germline variant. Germline P/LP variants were identified in ATM, ATR, BAP1, CHEK2, DDX41, FANCM, HAX1, MRE11A, MSH6, MUTYH, NF1, SAMD9L, and TMEM127.In this case series of 161 patients with mesothelioma, 16% had confirmed germline P/LP variants. Given the implications of a hereditary cancer syndrome diagnosis for preventive care and familial counseling, clinical approaches for addressing incidental P/LP germline variants in tumor-only NGS are needed. Tumor-only sequencing should not replace dedicated germline testing. Universal germline testing is likely needed for patients with mesothelioma.