中国TRK融合癌患者的患病率和临床基因组特征。
Prevalence and clinico-genomic characteristics of patients with TRK fusion cancer in China.
发表日期:2023 Aug 11
作者:
Yujun Xu, Xiaoliang Shi, Weifeng Wang, Lin Zhang, Shinghu Cheung, Marion Rudolph, Nicoletta Brega, Xiaowei Dong, Lili Qian, Liwei Wang, Shaohua Yuan, Daniel Shao Weng Tan, Kai Wang
来源:
npj Precision Oncology
摘要:
神经营养因子酪氨酸激酶(NTRK)融合基因NTRK1、NTRK2和NTRK3在多种实体瘤中作为驱动基因变异出现。然而,在中国实体瘤患者中,NTRK融合的患病率很少有报道。基于对10194名中国实体瘤患者的下一代测序数据分析,我们发现大约有0.4%(40/10194)的中国实体瘤患者具有NTRK融合。NTRK融合最常见于软组织肉瘤(3.0%),尤其是纤维肉瘤亚型(12.7%)。共鉴定出29种NTRK融合模式,其中11种很少有报道。NTRK融合主要与TP53(38%)、CDKN2A(23%)和ACVR2A(18%)共存,而与NTRK扩增(5.0%)和单核苷酸变异(2.5%)共存较少。DNA为基础的NTRK融合测序显示出较高的检出率,优于pan-TRK免疫组织化学(100% vs. 87.5%)。两名NTRK融合患者对拉罗替尼表现出临床反应,支持NTRK融合患者对TRK抑制剂的有效反应。© 2023. 自然出版集团英国。
Neurotrophic tyrosine kinase (NTRK) fusions involving NTRK1, NTRK2, and NTRK3 were found in a broad range of solid tumors as driver gene variants. However, the prevalence of NTRK fusions in Chinese solid tumor patients is rarely reported. Based on the next-generation sequencing data from 10,194 Chinese solid tumor patients, we identified approximately 0.4% (40/10,194) of Chinese solid tumor patients with NTRK fusion. NTRK fusions were most frequently detected in soft tissue sarcoma (3.0%), especially in the fibrosarcoma subtype (12.7%). A total of 29 NTRK fusion patterns were identified, of which 11 were rarely reported. NTRK fusion mostly co-occurred with TP53 (38%), CDKN2A (23%), and ACVR2A (18%) and rarely with NTRK amplification (5.0%) and single nucleotide variants (2.5%). DNA-based NTRK fusion sequencing exhibited a higher detection rate than pan-TRK immunohistochemistry (100% vs. 87.5%). Two patients with NTRK fusions showed clinical responses to larotrectinib, supporting the effective response of NTRK fusion patients to TRK inhibitors.© 2023. Nature Publishing Group UK.