通过分析具有耐药性和退缩性视网膜母细胞瘤患者的血清细胞外囊泡,识别与治疗耐药相关的途径。
Identifying Treatment Resistance Related Pathways by Analyzing Serum Extracellular Vesicles of Patients With Resistant Versus Regressed Retinoblastoma.
发表日期:2023 Aug 01
作者:
Radhika Manukonda, Saumya Jakati, Jyothi Attem, Dilip K Mishra, Tirupathi Rao Mocherla, Mamatha M Reddy, Khushboo Gulati, Krishna Mohan Poluri, Geeta K Vemuganti, Swathi Kaliki
来源:
GENES & DEVELOPMENT
摘要:
通过分析具有治疗抵抗性(TR)的视网膜母细胞瘤(RB)患者的血清小外泌体(sEVs),鉴定与TR相关的基因和途径,包括TR活跃型RB(TR-RB)和完全消退型RB(CR-RB)。使用透射电镜和纳米粒子追踪分析对血清来源的sEVs进行表征。将两例TR-RB患者和一例反应良好(>20年肿瘤无复发)的CR-RB患者的sEV转录组谱与与其年龄相配的对照组(n=3)进行比较。使用R Bioconductor软件包对基因表达数据进行分析。通过免疫组化和定量逆转录-聚合酶链反应研究了五例RB肿瘤和两例对照视网膜中CD9蛋白和CD9、CD63、CD81的mRNA表达。所分离的血清sEV呈圆形,尺寸在预期范围内(30-150 nm),其ζ电位在-10.8到15.9 mV之间。对于两位成人和四位儿童,sEV浓度的平均值±标准差为1.1×1012±0.1和5.8×1011±1.7个粒子/毫升。根据±2的log2折叠变化和P<0.05的标准,TR-RB中有492个非正常调节的基因,CR-RB中有184个。KAT2B、VWA1、CX3CL1、MLYCD、NR2F2、USP46-AS1、miR6724-4和LINC01257基因在TR-RB中特异性失调。负调节的凋亡信号、细胞生长和质子传输基因仅在TR-RB中超过5倍表达。RB肿瘤中CD9、CD63和CD81的mRNA水平高于对照视网膜,CD9的免疫活性在肿瘤的浸润区域呈增加和不稳定表达。血清sEVs可作为了解RB中TR机制的潜在液体活检来源。
To identify the genes and pathways responsible for treatment resistance (TR) in retinoblastoma (RB) by analyzing serum small extracellular vesicles (sEVs) of patients with TR active RB (TR-RB) and completely regressed RB (CR-RB).Serum-derived sEVs were characterized by transmission electron microscopy and nanoparticle tracking analysis. sEV transcriptome profiles of two TR-RB and one CR-RB with good response (>20 years tumor free) were compared to their age-matched controls (n = 3). Gene expression data were analyzed by the R Bioconductor package. The CD9 protein and mRNA expression of CD9, CD63, and CD81 were studied in five RB tumors and two control retinae by immunohistochemistry and quantitative reverse transcription-polymerase chain reaction.The isolated serum sEVs were round shaped and within the expected size (30-150 nm), and they had zeta potentials ranging from -10.8 to 15.9 mV. The mean ± SD concentrations of sEVs for two adults and four children were 1.1 × 1012 ± 0.1 and 5.8 × 1011 ± 1.7 particles/mL. Based on log2 fold change of ±2 and P < 0.05 criteria, there were 492 dysregulated genes in TR-RB and 184 in CR-RB. KAT2B, VWA1, CX3CL1, MLYCD, NR2F2, USP46-AS1, miR6724-4, and LINC01257 genes were specifically dysregulated in TR-RB. Negative regulation of apoptotic signaling, cell growth, and proton transport genes were greater than fivefold expressed only in TR-RB. CD9, CD63, and CD81 mRNA levels were high in RB tumors versus control retina, with increased and variable CD9 immunoreactivity in the invasive areas of the tumor.Serum sEVs could serve as a potential liquid biopsy source for understanding TR mechanisms in RB.