研究动态
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肺部肿瘤浸润性调节性T细胞具有与检查点阻断反应相关的不同转录谱和功能。

Lung tumor-infiltrating Treg have divergent transcriptional profiles and function linked to checkpoint blockade response.

发表日期:2023 Sep 15
作者: Arbor G Dykema, Jiajia Zhang, Laurene S Cheung, Sydney Connor, Boyang Zhang, Zhen Zeng, Christopher M Cherry, Taibo Li, Justina X Caushi, Marni Nishimoto, Andrew J Munoz, Zhicheng Ji, Wenpin Hou, Wentao Zhan, Dipika Singh, Tianbei Zhang, Rufiaat Rashid, Marisa Mitchell-Flack, Sadhana Bom, Ada Tam, Nick Ionta, Thet H K Aye, Yi Wang, Camille A Sawosik, Lauren E Tirado, Luke M Tomasovic, Derek VanDyke, Jamie B Spangler, Valsamo Anagnostou, Stephen Yang, Jonathan Spicer, Roni Rayes, Janis Taube, Julie R Brahmer, Patrick M Forde, Srinivasan Yegnasubramanian, Hongkai Ji, Drew M Pardoll, Kellie N Smith
来源: GENES & DEVELOPMENT

摘要:

调控性T细胞(Treg)传统上被认为是内源性和治疗诱导的抗肿瘤免疫的抑制剂,然而,它们在调节免疫检查点阻断(ICB)反应中的作用尚不清楚。本研究将单细胞RNA测序/T细胞受体测序(TCRseq)与治疗前和抗PD-1治疗的非小细胞肺癌(NSCLC)中的>73,000肿瘤浸润性调节性T细胞(TIL-Treg)相结合,同时进行了基于小鼠肿瘤模型的肿瘤相关抗原(TAA)特异Treg的单细胞分析。我们发现10个人类TIL-Treg亚群,其中大多数与小鼠TIL-Treg亚群高度一致。只有一个亚群选择性地表达高水平的TNFRSF4(OX40)和TNFRSF18(GITR),其通过对应配体的结合介导了增殖程序和NF-κB活化,以及调节Treg抑制相关的多个基因,包括LAG3。功能上,OX40hiGITRhi亚群在体外具有最高的抑制作用,其在总TIL-Treg中的比例与对PD-1阻断的抵抗力相关。令人意外的是,在小鼠肿瘤模型中,我们发现几乎所有TIL-Treg表达的特异性TAA的T细胞受体,在进入肿瘤后经过2周时间内完全发展出明显的类似TH1的特征,下调FoxP3,上调TBX21(Tbet),IFNG和某些促炎性颗粒酶的表达。将小鼠TAA特异性TH1-like Treg亚群的基因评分应用于人类单细胞数据集的传输学习结果显示,这个亚群在抗PD-1治疗应答性肿瘤中富集。这些发现表明TIL-Treg分为多个不同的转录亚群,对ICB诱导的抗肿瘤免疫可能产生相互对立的影响,并且表明TAA特异性TIL-Treg可能积极促进抗肿瘤反应。
Regulatory T cells (Treg) are conventionally viewed as suppressors of endogenous and therapy-induced antitumor immunity; however, their role in modulating responses to immune checkpoint blockade (ICB) is unclear. In this study, we integrated single-cell RNA-seq/T cell receptor sequencing (TCRseq) of >73,000 tumor-infiltrating Treg (TIL-Treg) from anti-PD-1-treated and treatment-naive non-small cell lung cancers (NSCLC) with single-cell analysis of tumor-associated antigen (TAA)-specific Treg derived from a murine tumor model. We identified 10 subsets of human TIL-Treg, most of which have high concordance with murine TIL-Treg subsets. Only one subset selectively expresses high levels of TNFRSF4 (OX40) and TNFRSF18 (GITR), whose engangement by cognate ligand mediated proliferative programs and NF-κB activation, as well as multiple genes involved in Treg suppression, including LAG3. Functionally, the OX40hiGITRhi subset is the most highly suppressive ex vivo, and its higher representation among total TIL-Treg correlated with resistance to PD-1 blockade. Unexpectedly, in the murine tumor model, we found that virtually all TIL-Treg-expressing T cell receptors that are specific for TAA fully develop a distinct TH1-like signature over a 2-week period after entry into the tumor, down-regulating FoxP3 and up-regulating expression of TBX21 (Tbet), IFNG, and certain proinflammatory granzymes. Transfer learning of a gene score from the murine TAA-specific TH1-like Treg subset to the human single-cell dataset revealed a highly analogous subcluster that was enriched in anti-PD-1-responding tumors. These findings demonstrate that TIL-Treg partition into multiple distinct transcriptionally defined subsets with potentially opposing effects on ICB-induced antitumor immunity and suggest that TAA-specific TIL-Treg may positively contribute to antitumor responses.