研究动态
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使用群体水平数据对血浆循环 microRNA 的遗传调控和疾病关联进行全面研究。

A comprehensive study of genetic regulation and disease associations of plasma circulatory microRNAs using population-level data.

发表日期:2024 Oct 21
作者: Rima Mustafa, Michelle M J Mens, Arno van Hilten, Jian Huang, Gennady Roshchupkin, Tianxiao Huan, Linda Broer, Joyce B J van Meurs, Paul Elliott, Daniel Levy, M Arfan Ikram, Marina Evangelou, Abbas Dehghan, Mohsen Ghanbari
来源: GENOME BIOLOGY

摘要:

MicroRNA (miRNA) 是一种小型非编码 RNA,可在转录后调节基因表达。众所周知,血浆 miRNA 水平的扰动会影响疾病风险,并具有作为疾病生物标志物的潜力。探索 miRNA 的遗传调控可能会对它们在控制基因表达和疾病机制中的重要作用产生新的见解。我们对鹿特丹研究的 2178 名参与者中的 2083 个血浆循环 miRNA 进行了全基因组关联研究,以确定 miRNA 表达数量性状基因座( miR-eQTL)。我们确定了 1289 个 SNP 和 63 个 miRNA 之间的 3292 个关联,其中 65% 在两个独立队列中重复。我们证明血浆 miR-eQTL 与基因表达、蛋白质和代谢物 QTL 共定位,这有助于识别 miRNA 调节的途径。我们使用英国生物银行数据 (N = 423,419) 在全表组关联研究和孟德尔随机化中研究了循环 miRNA 水平变化对各种临床状况的影响,揭示了几种 miRNA 对各种临床状况的多效性和因果效应。在孟德尔随机分析中,我们发现 miR-1908-5p 对良性结肠肿瘤风险具有保护性因果效应,并表明这种效应与其宿主基因 (FADS1) 无关。这项研究丰富了我们对良性结肠肿瘤遗传结构的理解。血浆 miRNA 并探索各种临床状况下 miRNA 的特征。基于群体的基因组学、其他组学层和临床数据的整合为揭示 miRNA 的潜在临床意义提供了机会,并为基于 miRNA 的新型治疗靶点发现提供了工具。© 2024。作者。
MicroRNAs (miRNAs) are small non-coding RNAs that post-transcriptionally regulate gene expression. Perturbations in plasma miRNA levels are known to impact disease risk and have potential as disease biomarkers. Exploring the genetic regulation of miRNAs may yield new insights into their important role in governing gene expression and disease mechanisms.We present genome-wide association studies of 2083 plasma circulating miRNAs in 2178 participants of the Rotterdam Study to identify miRNA-expression quantitative trait loci (miR-eQTLs). We identify 3292 associations between 1289 SNPs and 63 miRNAs, of which 65% are replicated in two independent cohorts. We demonstrate that plasma miR-eQTLs co-localise with gene expression, protein, and metabolite-QTLs, which help in identifying miRNA-regulated pathways. We investigate consequences of alteration in circulating miRNA levels on a wide range of clinical conditions in phenome-wide association studies and Mendelian randomisation using the UK Biobank data (N = 423,419), revealing the pleiotropic and causal effects of several miRNAs on various clinical conditions. In the Mendelian randomisation analysis, we find a protective causal effect of miR-1908-5p on the risk of benign colon neoplasm and show that this effect is independent of its host gene (FADS1).This study enriches our understanding of the genetic architecture of plasma miRNAs and explores the signatures of miRNAs across a wide range of clinical conditions. The integration of population-based genomics, other omics layers, and clinical data presents opportunities to unravel potential clinical significance of miRNAs and provides tools for novel miRNA-based therapeutic target discovery.© 2024. The Author(s).